Computational models and data analysis tools

Time series data analysis

Batch analysis of phenotypic microarray data (also known as BIOLOG): Code

Bayesian inference for generalized Lotka-Volterra models: Code

Genomic data analysis

Pipeline for short-read sequencing data analysis (SNVs, CNVs, aneuploidy): Code

Metabolic flux analysis

Reconstruction of strain-level genome-scale metabolic models from whole-genome sequencing data: Code

Mass spectrometry data analysis